IL_5JUS_172

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5JUS|1|B|C|2287, 5JUS|1|B|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_172 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.3148

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5JUS|1|B|C|2277
5JUS|1|B|C|2278
5JUS|1|B|A|2279
5JUS|1|B|A|2280
5JUS|1|B|A|2281
5JUS|1|B|U|2282
5JUS|1|B|G|2283
5JUS|1|B|C|2284
5JUS|1|B|C|2285
5JUS|1|B|U|2286
5JUS|1|B|C|2287
5JUS|1|B|G|2288
*
5JUS|1|B|C|2304
5JUS|1|B|G|2305
5JUS|1|B|C|2306
5JUS|1|B|G|2307

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain SA

eL41 (yeast L41)