IL_5JUS_178
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 5JUS|1|B|G|2522, 5JUS|1|B|G|2585, 5JUS|1|B|G|2586
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_178 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.2672
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|B|A|2520
5JUS|1|B|U|2521
5JUS|1|B|G|2522
5JUS|1|B|A|2523
5JUS|1|B|A|2524
5JUS|1|B|G|2525
5JUS|1|B|C|2526
*
5JUS|1|B|G|2584
5JUS|1|B|G|2585
5JUS|1|B|G|2586
5JUS|1|B|U|2587
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- uL23 (yeast L25)
- Chain F
- uL2 (yeast L2)
- Chain L
- eL8 (yeast L8)
Coloring options: