IL_5JUS_180
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_180 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.1876
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5JUS|1|B|C|2666
5JUS|1|B|A|2667
5JUS|1|B|U|2668
*
5JUS|1|B|A|2686
5JUS|1|B|G|2687
5JUS|1|B|U|2688
5JUS|1|B|A|2689
5JUS|1|B|G|2690
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain I
- uL18 (yeast L5)
- Chain O
- uL5 (yeast L11)
- Chain Y
- eL21 (yeast L21)
Coloring options: