IL_5JUS_202

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_202 not in the Motif Atlas

Homologous match to IL_5TBW_121

Geometric discrepancy: 0.3261

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5JUS|1|B|C|3162
5JUS|1|B|A|3163
5JUS|1|B|C|3164
5JUS|1|B|A|3165
5JUS|1|B|C|3166
*
5JUS|1|B|G|3284
5JUS|1|B|C|3285
5JUS|1|B|G|3286
5JUS|1|B|U|3287
5JUS|1|B|G|3288

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain U

uL22 (yeast L17)