IL_5JUS_214
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 5JUS|1|B|G|3369
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_214 not in the Motif Atlas
- Homologous match to IL_8C3A_139
- Geometric discrepancy: 0.2377
- The information below is about IL_8C3A_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
5JUS|1|B|U|3332
5JUS|1|B|G|3333
5JUS|1|B|U|3334
5JUS|1|B|A|3335
5JUS|1|B|A|3336
5JUS|1|B|G|3337
*
5JUS|1|B|C|3367
5JUS|1|B|U|3368
5JUS|1|B|G|3369
5JUS|1|B|A|3370
5JUS|1|B|G|3371
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain BA
- eL24 (yeast L24)
- Chain G
- uL3 (yeast L3)
- Chain IA
- eL31 (yeast L31)
Coloring options: