IL_5JUS_216
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_216 not in the Motif Atlas
- Homologous match to IL_5TBW_135
- Geometric discrepancy: 0.2926
- The information below is about IL_5TBW_135
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
5JUS|1|B|A|3342
5JUS|1|B|G|3343
5JUS|1|B|A|3344
5JUS|1|B|G|3345
*
5JUS|1|B|C|3360
5JUS|1|B|G|3361
5JUS|1|B|A|3362
5JUS|1|B|U|3363
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain BA
- eL24 (yeast L24)
- Chain FB
- eS8 (yeast S8)
- Chain W
- eL19 (yeast L19)
- Chain Z
- eL22 (yeast L22)
Coloring options: