IL_5JUS_230

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

5JUS|1|A|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_230 not in the Motif Atlas

Geometric match to IL_8P9A_281

Geometric discrepancy: 0.3637

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5JUS|1|A|G|868
5JUS|1|A|A|869
*
5JUS|1|A|U|958
5JUS|1|A|U|959
5JUS|1|A|U|960

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain KB

uS15 (yeast S13)

Chain TB

uS8 (yeast S22)

Chain YB

eS27 (yeast S27)