IL_5JUS_236

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_236 not in the Motif Atlas

Homologous match to IL_8C3A_507

Geometric discrepancy: 0.2145

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5JUS|1|A|G|1540
5JUS|1|A|G|1541
5JUS|1|A|G|1542
5JUS|1|A|A|1543
5JUS|1|A|U|1544
5JUS|1|A|A|1545
*
5JUS|1|A|U|1566
5JUS|1|A|U|1567
5JUS|1|A|C|1568
5JUS|1|A|A|1569
5JUS|1|A|A|1570
5JUS|1|A|C|1571

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain PB

uS13 (yeast S18)

Chain QB

eS19 (yeast S19)