IL_5JUS_242

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_242 not in the Motif Atlas

Geometric match to IL_4K31_004

Geometric discrepancy: 0.207

The information below is about IL_4K31_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5JUS|1|B|C|753
5JUS|1|B|G|754
5JUS|1|B|A|755
*
5JUS|1|B|U|777
5JUS|1|B|U|778
5JUS|1|B|G|779

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain FA

uL15 (yeast L28)

Chain GA

eL29 (yeast L29)

Chain V

eL18 (yeast L18)