IL_5JUS_243

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

5JUS|1|B|G|860

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_243 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.2855

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5JUS|1|B|G|833
5JUS|1|B|U|834
5JUS|1|B|G|835
5JUS|1|B|A|836
5JUS|1|B|A|837
5JUS|1|B|G|838
*
5JUS|1|B|U|855
5JUS|1|B|G|856
5JUS|1|B|G|857
5JUS|1|B|A|858
5JUS|1|B|G|859
5JUS|1|B|G|860
5JUS|1|B|C|861

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain UA

eL43 (yeast L43)

Chain W

eL19 (yeast L19)