IL_5JUS_246

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_246 not in the Motif Atlas

Homologous match to IL_8P9A_269

Geometric discrepancy: 0.3023

The information below is about IL_8P9A_269

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5JUS|1|B|A|1006
5JUS|1|B|U|1007
5JUS|1|B|U|1008
5JUS|1|B|A|1009
*
5JUS|1|B|U|1041
5JUS|1|B|U|1042
5JUS|1|B|C|1043
5JUS|1|B|U|1044

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain N

uL16 (yeast L10)