IL_5JUT_004

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

5JUT|1|A|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_004 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.3046

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5JUT|1|A|G|42
5JUT|1|A|A|43
5JUT|1|A|U|44
5JUT|1|A|U|45
5JUT|1|A|A|46
5JUT|1|A|A|47
5JUT|1|A|G|48
*
5JUT|1|A|C|431
5JUT|1|A|G|432
5JUT|1|A|C|433

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DC

yeast eEF2

Chain UB

uS12 (yeast S23)