IL_5JUT_042

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

5JUT|1|A|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_042 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2909

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

5JUT|1|A|G|867
5JUT|1|A|G|868
5JUT|1|A|A|869
*
5JUT|1|A|U|958
5JUT|1|A|U|959
5JUT|1|A|U|960
5JUT|1|A|U|961

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain KB

uS15 (yeast S13)

Chain YB

eS27 (yeast S27)