IL_5JUT_050
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_050 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.272
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5JUT|1|A|G|1041
5JUT|1|A|G|1042
5JUT|1|A|A|1043
5JUT|1|A|U|1044
*
5JUT|1|A|G|1074
5JUT|1|A|C|1075
5JUT|1|A|A|1076
5JUT|1|A|C|1077
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain KB
- uS15 (yeast S13)
- Chain XA
- uS2 (yeast S0)
- Chain XB
- eS26 (yeast S26)
- Chain YA
- eS1 (yeast S1)
Coloring options: