IL_5JUT_052
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAGUAUGG*CUGAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_052 not in the Motif Atlas
- Geometric match to IL_6CZR_146
- Geometric discrepancy: 0.22
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5JUT|1|A|G|1111
5JUT|1|A|G|1112
5JUT|1|A|A|1113
5JUT|1|A|G|1114
5JUT|1|A|U|1115
5JUT|1|A|A|1116
5JUT|1|A|U|1117
5JUT|1|A|G|1118
5JUT|1|A|G|1119
*
5JUT|1|A|C|1128
5JUT|1|A|U|1129
5JUT|1|A|G|1130
5JUT|1|A|A|1131
5JUT|1|A|A|1132
5JUT|1|A|A|1133
5JUT|1|A|C|1134
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain SA
- eL41 (yeast L41)
- Chain UB
- uS12 (yeast S23)
Coloring options: