IL_5JUT_071
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_071 not in the Motif Atlas
- Homologous match to IL_8C3A_465
- Geometric discrepancy: 0.2572
- The information below is about IL_8C3A_465
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76236.1
- Basepair signature
- cWW-tWH-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5JUT|1|A|C|1389
5JUT|1|A|U|1390
5JUT|1|A|A|1391
*
5JUT|1|A|U|1407
5JUT|1|A|G|1408
5JUT|1|A|G|1409
5JUT|1|A|A|1410
5JUT|1|A|A|1411
5JUT|1|A|G|1412
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain CB
- uS7 (yeast S5)
- Chain NB
- uS9 (yeast S16)
- Chain OB
- eS17 (yeast S17)
- Chain WA
- RACK1 (yeast Asc1)
Coloring options: