IL_5JUT_109
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGGGC*GUGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_109 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.264
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUT|1|B|G|725
5JUT|1|B|G|726
5JUT|1|B|G|727
5JUT|1|B|G|728
5JUT|1|B|C|729
*
5JUT|1|B|G|740
5JUT|1|B|U|741
5JUT|1|B|G|742
5JUT|1|B|C|743
5JUT|1|B|A|744
5JUT|1|B|C|745
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain GA
- eL29 (yeast L29)
- Chain V
- eL18 (yeast L18)
Coloring options: