IL_5JUT_136
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 5JUT|1|B|C|1196, 5JUT|1|B|A|1302, 5JUT|1|B|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_136 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1314
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5JUT|1|B|G|1194
5JUT|1|B|A|1195
5JUT|1|B|C|1196
5JUT|1|B|A|1197
5JUT|1|B|C|1198
5JUT|1|B|C|1199
5JUT|1|B|A|1200
5JUT|1|B|C|1201
5JUT|1|B|A|1202
5JUT|1|B|A|1203
5JUT|1|B|A|1204
5JUT|1|B|A|1205
*
5JUT|1|B|U|1299
5JUT|1|B|G|1300
5JUT|1|B|A|1301
5JUT|1|B|A|1302
5JUT|1|B|A|1303
5JUT|1|B|A|1304
5JUT|1|B|U|1305
5JUT|1|B|G|1306
5JUT|1|B|G|1307
5JUT|1|B|A|1308
5JUT|1|B|U|1309
5JUT|1|B|G|1310
5JUT|1|B|G|1311
5JUT|1|B|C|1312
5JUT|1|B|G|1313
5JUT|1|B|C|1314
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain G
- uL3 (yeast L3)
- Chain K
- uL30 (yeast L7)
- Chain KA
- eL33 (yeast L33)
- Chain N
- uL16 (yeast L10)
- Chain RA
- eL40 (yeast L40)
- Chain T
- uL13 (yeast L16)
Coloring options: