IL_5JUT_147

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCC*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_147 not in the Motif Atlas

Geometric match to IL_7Q82_001

Geometric discrepancy: 0.3038

The information below is about IL_7Q82_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5JUT|1|B|U|1595
5JUT|1|B|C|1596
5JUT|1|B|C|1597
*
5JUT|1|B|G|1611
5JUT|1|B|A|1612

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain CA

uL23 (yeast L25)

Chain LA

eL34 (yeast L34)

Chain PA

eL38 (yeast L38)