IL_5JUT_178
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_178 not in the Motif Atlas
- Homologous match to IL_8C3A_108
- Geometric discrepancy: 0.2493
- The information below is about IL_8C3A_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5JUT|1|B|C|2666
5JUT|1|B|A|2667
5JUT|1|B|U|2668
*
5JUT|1|B|A|2686
5JUT|1|B|G|2687
5JUT|1|B|U|2688
5JUT|1|B|A|2689
5JUT|1|B|G|2690
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain I
- uL18 (yeast L5)
- Chain O
- uL5 (yeast L11)
- Chain Y
- eL21 (yeast L21)
Coloring options: