IL_5JUT_184

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_184 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.139

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5JUT|1|B|G|2828
5JUT|1|B|U|2829
5JUT|1|B|G|2830
*
5JUT|1|B|U|2858
5JUT|1|B|U|2859
5JUT|1|B|U|2860
5JUT|1|B|U|2861
5JUT|1|B|U|2862

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain G

uL3 (yeast L3)

Chain N

uL16 (yeast L10)