IL_5JUT_199
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAUUAU*AGAAUC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_199 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.2203
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5JUT|1|B|G|3102
5JUT|1|B|A|3103
5JUT|1|B|U|3104
5JUT|1|B|U|3105
5JUT|1|B|A|3106
5JUT|1|B|U|3107
*
5JUT|1|B|A|3127
5JUT|1|B|G|3128
5JUT|1|B|A|3129
5JUT|1|B|A|3130
5JUT|1|B|U|3131
5JUT|1|B|C|3132
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain M
- uL6 (yeast L9)
- Chain RA
- eL40 (yeast L40)
- Chain T
- uL13 (yeast L16)
Coloring options: