IL_5JUT_207

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_207 not in the Motif Atlas

Homologous match to IL_5TBW_128

Geometric discrepancy: 0.2737

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5JUT|1|B|C|3235
5JUT|1|B|U|3236
5JUT|1|B|U|3237
5JUT|1|B|G|3238
*
5JUT|1|B|C|3249
5JUT|1|B|U|3250
5JUT|1|B|U|3251
5JUT|1|B|G|3252

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain T

uL13 (yeast L16)