IL_5JUT_214

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_214 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.3412

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5JUT|1|B|A|3342
5JUT|1|B|G|3343
5JUT|1|B|A|3344
5JUT|1|B|G|3345
*
5JUT|1|B|C|3360
5JUT|1|B|G|3361
5JUT|1|B|A|3362
5JUT|1|B|U|3363

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)

Chain W

eL19 (yeast L19)

Chain Z

eL22 (yeast L22)