IL_5JUT_225

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_225 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.3703

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

5JUT|1|EC|C|6899
5JUT|1|EC|A|6900
*
5JUT|1|EC|U|6913
5JUT|1|EC|A|6914
5JUT|1|EC|G|6915

Current chains

Chain EC

IRES

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain DC

yeast eEF2

Chain MB

uS19 (yeast S15)