IL_5JUT_227
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAUAAC*GCUAAUA
- Length
- 13 nucleotides
- Bulged bases
- 5JUT|1|A|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_227 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.3011
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JUT|1|A|U|144
5JUT|1|A|A|145
5JUT|1|A|U|146
5JUT|1|A|A|147
5JUT|1|A|A|148
5JUT|1|A|C|149
*
5JUT|1|A|G|165
5JUT|1|A|C|166
5JUT|1|A|U|167
5JUT|1|A|A|168
5JUT|1|A|A|169
5JUT|1|A|U|170
5JUT|1|A|A|171
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain DB
- eS6 (yeast S6)
- Chain VB
- eS24 (yeast S24)
Coloring options: