IL_5JUT_237

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_237 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.1421

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5JUT|1|B|G|725
5JUT|1|B|G|726
5JUT|1|B|G|727
5JUT|1|B|G|728
*
5JUT|1|B|U|741
5JUT|1|B|G|742
5JUT|1|B|C|743
5JUT|1|B|A|744
5JUT|1|B|C|745

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain GA

eL29 (yeast L29)

Chain V

eL18 (yeast L18)