IL_5JUT_249

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

5JUT|1|B|A|3130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_249 not in the Motif Atlas

Homologous match to IL_8P9A_348

Geometric discrepancy: 0.1987

The information below is about IL_8P9A_348

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

5JUT|1|B|A|3103
5JUT|1|B|U|3104
5JUT|1|B|U|3105
5JUT|1|B|A|3106
5JUT|1|B|U|3107
*
5JUT|1|B|A|3127
5JUT|1|B|G|3128
5JUT|1|B|A|3129
5JUT|1|B|A|3130
5JUT|1|B|U|3131

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain M

uL6 (yeast L9)

Chain RA

eL40 (yeast L40)

Chain T

uL13 (yeast L16)