IL_5JUU_009

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

5JUU|1|A|C|114, 5JUU|1|A|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_009 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1331

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5JUU|1|A|U|113
5JUU|1|A|C|114
5JUU|1|A|G|115
5JUU|1|A|U|116
*
5JUU|1|A|A|300
5JUU|1|A|A|301

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)

Chain FB

eS8 (yeast S8)

Chain IB

uS17 (yeast S11)