IL_5JUU_032

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5JUU|1|A|A|579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_032 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.2015

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5JUU|1|A|G|562
5JUU|1|A|U|563
5JUU|1|A|G|564
5JUU|1|A|C|565
5JUU|1|A|C|566
5JUU|1|A|A|567
5JUU|1|A|G|568
*
5JUU|1|A|C|575
5JUU|1|A|G|576
5JUU|1|A|G|577
5JUU|1|A|U|578
5JUU|1|A|A|579
5JUU|1|A|A|580
5JUU|1|A|U|581
5JUU|1|A|U|582
5JUU|1|A|C|583

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AB

uS3 (yeast S3)

Chain BC

eS30 (yeast S30)

Chain DC

yeast eEF2

Chain EC

IRES

Chain UB

uS12 (yeast S23)