IL_5JUU_033
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_033 not in the Motif Atlas
- Homologous match to IL_4V88_416
- Geometric discrepancy: 0.1607
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
5JUU|1|A|G|616
5JUU|1|A|U|617
5JUU|1|A|U|618
5JUU|1|A|A|619
5JUU|1|A|A|620
5JUU|1|A|A|621
5JUU|1|A|A|622
*
5JUU|1|A|U|1104
5JUU|1|A|C|1105
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain UB
- uS12 (yeast S23)
- Chain XB
- eS26 (yeast S26)
- Chain ZA
- uS5 (yeast S2)
Coloring options: