IL_5JUU_044

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_044 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.1608

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5JUU|1|A|G|871
5JUU|1|A|G|872
5JUU|1|A|U|873
5JUU|1|A|C|874
*
5JUU|1|A|G|953
5JUU|1|A|G|954
5JUU|1|A|A|955
5JUU|1|A|C|956

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain KB

uS15 (yeast S13)

Chain YA

eS1 (yeast S1)

Chain YB

eS27 (yeast S27)