IL_5JUU_045

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

5JUU|1|A|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_045 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.2015

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5JUU|1|A|C|874
5JUU|1|A|G|875
5JUU|1|A|G|876
5JUU|1|A|G|877
5JUU|1|A|G|878
*
5JUU|1|A|C|950
5JUU|1|A|A|951
5JUU|1|A|A|952
5JUU|1|A|G|953

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain KB

uS15 (yeast S13)

Chain XB

eS26 (yeast S26)

Chain YA

eS1 (yeast S1)