IL_5JUU_115
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5JUU|1|B|A|933, 5JUU|1|B|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_115 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1232
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUU|1|B|G|805
5JUU|1|B|A|806
5JUU|1|B|A|807
5JUU|1|B|A|808
5JUU|1|B|G|809
*
5JUU|1|B|C|931
5JUU|1|B|U|932
5JUU|1|B|A|933
5JUU|1|B|G|934
5JUU|1|B|U|935
5JUU|1|B|A|936
5JUU|1|B|G|937
5JUU|1|B|C|938
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain H
- uL4 (yeast L4)
- Chain OA
- eL37 (yeast L37)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
Coloring options: