IL_5JUU_196
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 5JUU|1|B|A|3142, 5JUU|1|B|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_196 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.1447
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
5JUU|1|B|C|3004
5JUU|1|B|A|3005
5JUU|1|B|A|3006
5JUU|1|B|U|3007
*
5JUU|1|B|A|3139
5JUU|1|B|G|3140
5JUU|1|B|A|3141
5JUU|1|B|A|3142
5JUU|1|B|C|3143
5JUU|1|B|G|3144
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- uL3 (yeast L3)
- Chain T
- uL13 (yeast L16)
Coloring options: