IL_5JUU_200

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

5JUU|1|B|U|3056, 5JUU|1|B|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_200 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1756

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5JUU|1|B|U|3054
5JUU|1|B|U|3055
5JUU|1|B|U|3056
5JUU|1|B|U|3057
5JUU|1|B|U|3058
5JUU|1|B|G|3059
*
5JUU|1|B|C|3084
5JUU|1|B|G|3085
5JUU|1|B|A|3086
5JUU|1|B|A|3087
5JUU|1|B|G|3088

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain BA

eL24 (yeast L24)

Chain G

uL3 (yeast L3)

Chain IA

eL31 (yeast L31)