IL_5JUU_236
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5JUU|1|A|C|1274, 5JUU|1|A|U|1432, 5JUU|1|A|G|1435
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_236 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1554
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|A|U|1272
5JUU|1|A|G|1273
5JUU|1|A|C|1274
5JUU|1|A|A|1275
5JUU|1|A|U|1276
5JUU|1|A|G|1277
5JUU|1|A|G|1278
*
5JUU|1|A|U|1430
5JUU|1|A|C|1431
5JUU|1|A|U|1432
5JUU|1|A|G|1433
5JUU|1|A|U|1434
5JUU|1|A|G|1435
5JUU|1|A|A|1436
5JUU|1|A|U|1437
5JUU|1|A|G|1438
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AB
- uS3 (yeast S3)
- Chain AC
- uS14 (yeast S29)
- Chain DC
- yeast eEF2
- Chain EC
- IRES
- Chain HB
- eS10 (yeast S10)
- Chain RB
- uS10 (yeast S20)
Coloring options: