IL_5JVH_013

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5JVH|1|X|G|814, 5JVH|1|X|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_013 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.0606

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

5JVH|1|X|G|687
5JVH|1|X|A|688
5JVH|1|X|A|689
5JVH|1|X|A|690
5JVH|1|X|C|691
*
5JVH|1|X|G|812
5JVH|1|X|A|813
5JVH|1|X|G|814
5JVH|1|X|A|815
5JVH|1|X|U|816
5JVH|1|X|A|817
5JVH|1|X|G|818
5JVH|1|X|C|819

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15