IL_5JVH_048

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

5JVH|1|X|U|1601, 5JVH|1|X|G|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_048 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.3627

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5JVH|1|X|U|1426
5JVH|1|X|G|1427
5JVH|1|X|G|1428
5JVH|1|X|A|1429
5JVH|1|X|G|1430
*
5JVH|1|X|C|1598
5JVH|1|X|G|1599
5JVH|1|X|U|1600
5JVH|1|X|U|1601
5JVH|1|X|G|1602
5JVH|1|X|A|1603
5JVH|1|X|A|1604
5JVH|1|X|A|1605

Current chains

Chain X

23S ribosomal RNA

Nearby chains