IL_5JVH_088
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CCGCUG*UAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JVH_088 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.2989
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5JVH|1|X|C|2659
5JVH|1|X|C|2660
5JVH|1|X|G|2661
5JVH|1|X|C|2662
5JVH|1|X|U|2663
5JVH|1|X|G|2664
*
5JVH|1|X|U|2704
5JVH|1|X|A|2705
5JVH|1|X|U|2706
5JVH|1|X|G|2707
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L14
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
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