IL_5JVH_089

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

5JVH|1|X|U|2668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JVH_089 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1091

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5JVH|1|X|U|2666
5JVH|1|X|C|2667
5JVH|1|X|U|2668
5JVH|1|X|C|2669
5JVH|1|X|C|2670
*
5JVH|1|X|G|2698
5JVH|1|X|G|2699
5JVH|1|X|U|2700
5JVH|1|X|A|2701
5JVH|1|X|G|2702

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19