IL_5JVH_098
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CAAUGAUAC*GAAAAGUCG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JVH_098 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.0755
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JVH|1|Y|C|73
5JVH|1|Y|A|74
5JVH|1|Y|A|75
5JVH|1|Y|U|76
5JVH|1|Y|G|77
5JVH|1|Y|A|78
5JVH|1|Y|U|79
5JVH|1|Y|A|80
5JVH|1|Y|C|81
*
5JVH|1|Y|G|100
5JVH|1|Y|A|101
5JVH|1|Y|A|102
5JVH|1|Y|A|103
5JVH|1|Y|A|104
5JVH|1|Y|G|105
5JVH|1|Y|U|106
5JVH|1|Y|C|107
5JVH|1|Y|G|108
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: