IL_5K0Y_035
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_035 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.361
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
5K0Y|1|A|U|797
5K0Y|1|A|A|798
5K0Y|1|A|C|799
*
5K0Y|1|A|G|856
5K0Y|1|A|A|857
5K0Y|1|A|A|858
5K0Y|1|A|U|859
5K0Y|1|A|A|860
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain Q
- ribosomal protein uS12
- Chain X
- ribosomal protein eS7
- Chain a
- ribosomal protein uS8
Coloring options: