IL_5K0Y_037
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- 5K0Y|1|A|C|847
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_037 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.2954
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5K0Y|1|A|G|803
5K0Y|1|A|A|804
5K0Y|1|A|A|805
5K0Y|1|A|A|806
5K0Y|1|A|A|807
5K0Y|1|A|A|808
5K0Y|1|A|A|809
5K0Y|1|A|U|810
5K0Y|1|A|U|811
*
5K0Y|1|A|A|845
5K0Y|1|A|C|846
5K0Y|1|A|C|847
5K0Y|1|A|G|848
5K0Y|1|A|C|849
5K0Y|1|A|A|850
5K0Y|1|A|G|851
5K0Y|1|A|C|852
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain I
- 40S ribosomal protein S4
- Chain K
- Ribosomal protein S9 (Predicted)
- Chain a
- ribosomal protein uS8
Coloring options: