IL_5K0Y_045
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 5K0Y|1|A|G|966
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_045 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.2236
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5K0Y|1|A|G|948
5K0Y|1|A|C|949
5K0Y|1|A|U|950
5K0Y|1|A|A|951
5K0Y|1|A|G|952
*
5K0Y|1|A|C|963
5K0Y|1|A|U|964
5K0Y|1|A|U|965
5K0Y|1|A|G|966
5K0Y|1|A|G|967
5K0Y|1|A|A|968
5K0Y|1|A|C|969
5K0Y|1|A|C|970
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain i
- ribosomal protein eS1
- Chain j
- ribosomal protein uS11
Coloring options: