IL_5K0Y_048
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 5K0Y|1|A|C|1149, 5K0Y|1|A|U|1151, 5K0Y|1|A|G|1153
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_048 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1663
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5K0Y|1|A|C|1087
5K0Y|1|A|G|1088
5K0Y|1|A|A|1089
*
5K0Y|1|A|U|1148
5K0Y|1|A|C|1149
5K0Y|1|A|U|1150
5K0Y|1|A|U|1151
5K0Y|1|A|U|1152
5K0Y|1|A|G|1153
5K0Y|1|A|G|1154
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain Q
- ribosomal protein uS12
- Chain Y
- 40S ribosomal protein S27
- Chain Z
- ribosomal protein uS15
- Chain a
- ribosomal protein uS8
- Chain b
- 40S ribosomal protein S21
- Chain c
- ribosomal protein uS5
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