IL_5K0Y_052

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_052 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1562

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5K0Y|1|A|G|1164
5K0Y|1|A|G|1165
5K0Y|1|A|A|1166
5K0Y|1|A|G|1167
5K0Y|1|A|U|1168
5K0Y|1|A|A|1169
5K0Y|1|A|U|1170
5K0Y|1|A|G|1171
*
5K0Y|1|A|U|1182
5K0Y|1|A|G|1183
5K0Y|1|A|A|1184
5K0Y|1|A|A|1185
5K0Y|1|A|A|1186
5K0Y|1|A|C|1187

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Q

ribosomal protein uS12