IL_5K0Y_065

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GG*UCUGU

Length

7 nucleotides

Bulged bases

5K0Y|1|A|C|1489, 5K0Y|1|A|U|1490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_065 not in the Motif Atlas

Geometric match to IL_5J7L_048

Geometric discrepancy: 0.1556

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5K0Y|1|A|G|1330
5K0Y|1|A|G|1331
*
5K0Y|1|A|U|1488
5K0Y|1|A|C|1489
5K0Y|1|A|U|1490
5K0Y|1|A|G|1491
5K0Y|1|A|U|1492

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein uS14

Chain g

ribosomal protein uS3

Chain h

ribosomal protein uS10