IL_5K0Y_071

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UACG*CCCA

Length

8 nucleotides

Bulged bases

5K0Y|1|A|C|1433

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_071 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3847

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5K0Y|1|A|U|1404
5K0Y|1|A|A|1405
5K0Y|1|A|C|1406
5K0Y|1|A|G|1407
*
5K0Y|1|A|C|1431
5K0Y|1|A|C|1432
5K0Y|1|A|C|1433
5K0Y|1|A|A|1434

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

ribosomal protein uS9

Chain h

ribosomal protein uS10