IL_5K0Y_080
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 5K0Y|1|A|C|1696, 5K0Y|1|A|A|1829
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_080 not in the Motif Atlas
- Homologous match to IL_4V88_463
- Geometric discrepancy: 0.2127
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|C|1695
5K0Y|1|A|C|1696
5K0Y|1|A|G|1697
*
5K0Y|1|A|C|1827
5K0Y|1|A|A|1828
5K0Y|1|A|A|1829
5K0Y|1|A|G|1830
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- mRNA
- Chain N
- Transfer RNA; tRNA
- Chain j
- ribosomal protein uS11
- Chain k
- ribosomal protein eS26
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